Details of RNA Modification Site of hg38
mod ID m6A_site_340360 mod Site chr17:1775089-1775090:+
mod Type m6A Sequence CAAAGTTTGACTCCAGAAAGACTTCCCTCGAGGATTTCTAC
Motif Score 3.31938095238095
RNA Structure Motif .....(((.((..........)).)))....
 MFE -2.00
Support Dataset Num 4 Support sub-Dataset Num 12
Support Dataset List
Support sub-Dataset List

GSM2987447, GSM2010456, GSM2332986, GSM2332989, GSM2332990, GSM2464905, GSM2464907, GSM2464909, GSM2464911, GSM2464915, GSM2464917, GSM2464919
Cell/Tissue List HepG2, MM6, HEK293T, endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000576406.5,ENST00000573763.1,ENST00000572048.1,ENST00000254722.9
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000576406.5ENSG00000132386.11SERPINF1protein_codingcds-5
ENST00000573763.1ENSG00000132386.11SERPINF1protein_codingcds-2
ENST00000572048.1ENSG00000132386.11SERPINF1protein_codingcds-2
ENST00000254722.9ENSG00000132386.11SERPINF1protein_codingcds-6
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

♥ Click the "Show Detail" button to show detailed list and click again to hide it.

© 2023, Qu Lab. School of Life Science, Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1