| mod ID | m6A_site_344612 | mod Site | chr17:5501522-5501523:- | |||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
TTGAGCTGTATTATCTCTGGACCTTGGGATTGTGGGAGGCT |
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| Motif Score | 3.62240476190476 | |||||||||||||||||||||||||
| RNA Structure Motif |
...(((.(((((........))))).))).. |
MFE | -4.50 | |||||||||||||||||||||||
| Support Dataset Num | 8 | Support sub-Dataset Num | 27 | |||||||||||||||||||||||
| Support Dataset List | ||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM1594131, GSM1723347, GSM1723349, GSM1828594, GSM2203043, GSM2203047, GSM2203052, GSM2203055, GSM2203056, GSM2203059, GSM2203060, GSM2203063, GSM2203064, GSM2283214, GSM2460354, GSM2460356, GSM2460358, GSM2460360, GSM2754222, GSM2754224, GSM2754226, GSM2754244, GSM2754246, GSM2754248, GSM2464921, GSM2464923, GSM2564019 |
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| Cell/Tissue List |
GM12878, LCLs, CD8T, Huh7, CD4T, MSC, TIME, TREX, endometrial, NB4 |
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| Seq Type List | m6A-seq,m6A-CLIP/IP,MeRIP-seq | |||||||||||||||||||||||||
| Transcript ID List | ENST00000262467.10,ENST00000574406.1,ENST00000544378.6,rmsk_4623523 | |||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | na | |||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1