Details of RNA Modification Site of hg38
mod ID m6A_site_344665 mod Site chr17:5541988-5541989:-
mod Type m6A Sequence CACAGCTGAGGACTGCAAGGACCTTGCCTTTGGGCTGAGAG
Motif Score 3.62240476190476
RNA Structure Motif ..((((.((....)).))))(((....))).
 MFE -7.80
Support Dataset Num 2 Support sub-Dataset Num 2
Support Dataset List GSE107954, GSE93911
Support sub-Dataset List GSM2884195, GSM2464931
Cell/Tissue List CD34, HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000544378.6,ENST00000613500.4,ENST00000617618.4,ENST00000571451.6,ENST00000345221.7,ENST00000571307.1,ENST00000572272.6,ENST00000354411.7,ENST00000269280.8,ENST00000262467.10,ENST00000577119.5,ENST00000619223.4
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000544378.6ENSG00000091592.16NLRP1nonsense_mediated_decaycds-6
ENST00000613500.4ENSG00000091592.16NLRP1protein_codingcds-7
ENST00000617618.4ENSG00000091592.16NLRP1protein_codingcds-7
ENST00000571451.6ENSG00000091592.16NLRP1protein_codingcds-6
ENST00000345221.7ENSG00000091592.16NLRP1protein_codingcds-7
ENST00000571307.1ENSG00000091592.16NLRP1processed_transcriptexon-7
ENST00000572272.6ENSG00000091592.16NLRP1protein_codingcds-6
ENST00000354411.7ENSG00000091592.16NLRP1protein_codingcds-6
ENST00000269280.8ENSG00000091592.16NLRP1protein_codingcds-7
ENST00000262467.10ENSG00000091592.16NLRP1protein_codingcds-6
ENST00000577119.5ENSG00000091592.16NLRP1protein_codingcds-6
ENST00000619223.4ENSG00000091592.16NLRP1protein_codingcds-7
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 30065315, 30154548

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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