Details of RNA Modification Site of hg38
mod ID m6A_site_347198 mod Site chr17:8142361-8142362:-
mod Type m6A Sequence GGGCGGGGCTGAGCCTGGGGACCAGGTGATTAAGTACGTGC
Motif Score 3.62240476190476
RNA Structure Motif ..(((..((((((...)))))).....))).
 MFE -9.80
Support Dataset Num 4 Support sub-Dataset Num 9
Support Dataset List
Support sub-Dataset List

GSM2991403, GSM2884195, GSM2884197, GSM2884199, GSM2203047, GSM2464907, GSM2464911, GSM2464917, GSM2464919
Cell/Tissue List HeLa, CD34, Huh7, endometrial
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000317276.9,ENST00000582719.5,ENST00000585284.1,ENST00000581082.5
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000317276.9ENSG00000179094.16AC129492.1protein_codingcds-21
ENST00000582719.5ENSG00000179094.16AC129492.1nonsense_mediated_decayutr3-20
ENST00000585284.1ENSG00000179094.16AC129492.1retained_intronexon-1
ENST00000581082.5ENSG00000179094.16AC129492.1protein_codingcds-20
Conserved Sites mm10:m6A_site_94789;susScr11:m6A_site_27393
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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