Details of RNA Modification Site of hg38
mod ID m6A_site_348797 mod Site chr17:12763447-12763448:+
mod Type m6A Sequence GTTTTCACCCTCTTCTGTGGACAGCAATGGGCTGCAGTTAA
Motif Score 3.64304761904762
RNA Structure Motif ...((........)).((((.....))))..
 MFE -5.80
Support Dataset Num 3 Support sub-Dataset Num 10
Support Dataset List GSE125803, GSE55572, GSE93911
Support sub-Dataset List

GSM3582053, GSM1339405, GSM2464905, GSM2464907, GSM2464909, GSM2464911, GSM2464913, GSM2464915, GSM2464917, GSM2464919
Cell/Tissue List A549, fibroblasts, endometrial
Seq Type List MeRIP-seq,m6A-seq
Transcript ID List ENST00000443061.1,ENST00000343344.8,ENST00000425538.5
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000443061.1ENSG00000141052.17MYOCDprotein_codingcds-6
ENST00000343344.8ENSG00000141052.17MYOCDprotein_codingcds-13
ENST00000425538.5ENSG00000141052.17MYOCDprotein_codingcds-14
Conserved Sites mm10:m6A_site_93305
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 31597913, 24981863, 30154548

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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