| mod ID | m6A_site_351010 | mod Site | chr17:17815223-17815224:- | |||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
CCCTGGGTCAGCTGATGGGGACAAGTAAGTGTCGTTGTGCC |
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| Motif Score | 3.64304761904762 | |||||||||||||||||||||||||||||||||||||||||||||
| RNA Structure Motif |
..............((((......))))... |
MFE | -3.20 | |||||||||||||||||||||||||||||||||||||||||||
| Support Dataset Num | 3 | Support sub-Dataset Num | 3 | |||||||||||||||||||||||||||||||||||||||||||
| Support Dataset List | GSE125240, GSE129842, GSE93911 | |||||||||||||||||||||||||||||||||||||||||||||
| Support sub-Dataset List | GSE125240, GSE129842, GSM2464905 | |||||||||||||||||||||||||||||||||||||||||||||
| Cell/Tissue List |
brain, kidney, liver, hESC-HEK293T, endometrial |
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| Seq Type List | m6A-REF-seq,MAZTER-seq,m6A-seq | |||||||||||||||||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000355815.8,ENST00000261646.9,ENST00000490796.1,ENST00000395751.8,ENST00000447641.5,ENST00000395757.5,ENST00000395756.5,ENST00000581707.1 | |||||||||||||||||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | mm10:m6A_site_91070;rn6:m6A_site_16015 | |||||||||||||||||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||||||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||||||||||||||||||||||||||||||||
| PubMed ID | 31281898, 31257032, 30154548 |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1