Details of RNA Modification Site of hg38
mod ID m6A_site_35654 mod Site chr1:70228477-70228478:+
mod Type m6A Sequence TGTTAAGTTCCATGATCCAGACTCAGCAGTTGTGGCACAGC
Motif Score 3.31938095238095
RNA Structure Motif ....(((((((............))))))).
 MFE -3.20
Support Dataset Num 2 Support sub-Dataset Num 2
Support Dataset List GSE102493, GSE125780
Support sub-Dataset List GSM2739503, GSM4024128
Cell/Tissue List HeLa, HEK293T
Seq Type List m6A-seq,DART-seq
Transcript ID List ENST00000473950.5,ENST00000475204.5,ENST00000370950.7,ENST00000463877.1,ENST00000469170.5,ENST00000481648.5,ENST00000370951.5,ENST00000486667.5,ENST00000395136.6
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000473950.5ENSG00000116754.13SRSF11nonsense_mediated_decaycds-2
ENST00000475204.5ENSG00000116754.13SRSF11nonsense_mediated_decaycds-3
ENST00000370950.7ENSG00000116754.13SRSF11protein_codingcds-3
ENST00000463877.1ENSG00000116754.13SRSF11processed_transcriptexon-3
ENST00000469170.5ENSG00000116754.13SRSF11processed_transcriptexon-2
ENST00000481648.5ENSG00000116754.13SRSF11processed_transcriptexon-1
ENST00000370951.5ENSG00000116754.13SRSF11protein_codingcds-3
ENST00000486667.5ENSG00000116754.13SRSF11processed_transcriptexon-3
ENST00000395136.6ENSG00000116754.13SRSF11protein_codingcds-2
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 1 Writer Name List RBM15B
Writer Catalysis Detail

Writer Name Writer ID Writer Binding Site Source
RBM15BRBM15B:CH9980chr1:70228477-70228497SBDH685-9980
PubMed ID 29507755, 31548708

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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