| mod ID | m6A_site_35844 | mod Site | chr1:70367813-70367814:+ | |||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
ACTGAGCGATTAACCTGTGAACTTCCTTCTCCTGGCTCAGA |
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| Motif Score | 3.37338095238095 | |||||||||||||||||||||||||||||||||||
| RNA Structure Motif |
........((.(.(((.....))).)..)). |
MFE | -0.80 | |||||||||||||||||||||||||||||||||
| Support Dataset Num | 8 | Support sub-Dataset Num | 22 | |||||||||||||||||||||||||||||||||
| Support Dataset List | ||||||||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739506, GSM2739507, GSM2991403, GSM2991416, GSM3396437, GSM3396438, GSM4024125, GSM1135032, GSM1135033, GSM1339395, GSM1339401, GSM1339403, GSM1339427, GSM2010454, GSM2203043, GSM2203044, GSM2203047, GSM2203051, GSM2203055, GSM2203056, GSM2203059, GSM2417479 |
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| Cell/Tissue List |
HeLa, HEK293T, hESCs, fibroblasts, A549, MM6, Huh7, HEK293A-TOA |
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| Seq Type List | m6A-seq,MeRIP-seq,DART-seq | |||||||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000359875.9,ENST00000370940.6,ENST00000463058.5,rmsk_159046,ENST00000361764.8,ENST00000531950.1 | |||||||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | na | |||||||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1