Details of RNA Modification Site of hg38
mod ID m6A_site_359208 mod Site chr17:35725385-35725386:+
mod Type m6A Sequence ACTGAGACCTAACTCACTGGACTCAGAGGAGGAATCGTGGA
Motif Score 4.06504166666667
RNA Structure Motif .......(((.(((....)))..))).....
 MFE -5.10
Support Dataset Num 2 Support sub-Dataset Num 3
Support Dataset List GSE102493, GSE55572
Support sub-Dataset List

GSM2991416, GSM1339405, GSM1339427
Cell/Tissue List HeLa, fibroblasts, A549
Seq Type List m6A-seq
Transcript ID List ENST00000621914.4,ENST00000610402.5,ENST00000603067.5
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000621914.4ENSG00000006125.18AP2B1protein_codingutr3-21
ENST00000610402.5ENSG00000006125.18AP2B1protein_codingutr3-22
ENST00000603067.5ENSG00000270647.6TAF15retained_intronintron-1
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 29507755, 24981863

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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