| mod ID | m6A_site_361624 | mod Site | chr17:40330865-40330866:+ | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
TTTTTCTGCAGCATCACAGGACATGGCCCCCTCAGCCACCT |
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| Motif Score | 3.64304761904762 | ||||||||||||||||||||||||||||||
| RNA Structure Motif |
(((.((.....((.....)).....))))). |
MFE | -1.40 | ||||||||||||||||||||||||||||
| Support Dataset Num | 8 | Support sub-Dataset Num | 22 | ||||||||||||||||||||||||||||
| Support Dataset List | |||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739502, GSM2739503, GSM2739507, GSM2739522, GSM2739523, GSM2739534, GSM2987449, GSM3396437, GSM3396438, GSM3582048, GSM1135021, GSM1135032, GSM1135033, GSM2417479, GSM2754213, GSM2754216, GSM2464905, GSM2464909, GSM2464911, GSM2464913, GSM2464915, GSM2464931 |
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| Cell/Tissue List |
HeLa, HepG2, HEK293T, HEK293A-TOA, iSLK, endometrial, HEC-1-A |
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| Seq Type List | m6A-seq,MeRIP-seq | ||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000425707.7,ENST00000582914.1,ENST00000254066.10,ENST00000394089.6,ENST00000577646.5 | ||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | mm10:m6A_site_112555;susScr11:m6A_site_22961 | ||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | ||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | ||||||||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
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School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1