Details of RNA Modification Site of hg38
mod ID m6A_site_36414 mod Site chr1:77063022-77063023:+
mod Type m6A Sequence CATTATTATGAACCTTTTGGACCTGATGAATGTACAATGTA
Motif Score 3.62240476190476
RNA Structure Motif ((((.(.((....))...).)))).......
 MFE -1.20
Support Dataset Num 4 Support sub-Dataset Num 10
Support Dataset List
Support sub-Dataset List

GSM1166139, GSM1166140, GSM1166141, GSM1166142, GSM1166143, GSM1166144, GSM1339393, GSM1339395, GSM2460347, GSM2464931
Cell/Tissue List U2OS, hNPCs, hESCs, iSLK, HEC-1-A
Seq Type List MeRIP-seq,m6A-seq
Transcript ID List ENST00000477717.6,ENST00000318803.6
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000477717.6ENSG00000117069.15ST6GALNAC5protein_codingcds-5
ENST00000318803.6ENSG00000117069.15ST6GALNAC5nonsense_mediated_decayutr3-5
Conserved Sites mm10:m6A_site_407497
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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