| mod ID | m6A_site_364834 | mod Site | chr17:43045645-43045646:- | ||||||||||||||||||||||||||||||||||||||||||||||||
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| mod Type | m6A | Sequence |
CACAGGTACAGAGCCACAGGACCCCAAGAATGAGCTTACAA |
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| Motif Score | 3.62240476190476 | ||||||||||||||||||||||||||||||||||||||||||||||||||
| RNA Structure Motif |
......(((((..((...)).....)).))) |
MFE | -0.30 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Support Dataset Num | 21 | Support sub-Dataset Num | 48 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Support Dataset List | |||||||||||||||||||||||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739506, GSM2739534, GSM2739535, GSM2991403, GSM2987449, GSM3396437, GSM3396438, GSM3582054, GSM928399, GSM908337, GSM1135032, GSM1135033, GSM1339395, GSM1339401, GSM1339427, GSM1339429, GSM1908206, GSM1982257, GSM2010454, GSM2010456, GSM2203047, GSM2203056, GSM2283210, GSM2283212, GSM2283213, GSM2283215, GSM2324292, GSM2324298, GSM2324308, GSM2324310, GSM2332975, GSM2332977, GSM2332978, GSM2332985, GSM2332986, GSM2332988, GSM2332989, GSM2332990, GSM2417478, GSM2417479, GSM2460350, GSM2460356, GSM2754216, GSM2464911, GSM2464927, GSM2464931, GSM2483505, GSM2564019 |
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| Cell/Tissue List |
HeLa, HepG2, HEK293T, A549, hESCs, MT4, MM6, Huh7, Jurkat, CD4T, peripheral-blood, GSC-11, HEK293A-TOA, iSLK, TIME, endometrial, HEC-1-A, GSCs, NB4 |
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| Seq Type List | m6A-seq,MeRIP-seq | ||||||||||||||||||||||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000493795.5,ENST00000468300.5,ENST00000352993.7,ENST00000591849.5,ENST00000586385.5,ENST00000644379.1,ENST00000357654.8,ENST00000471181.7,ENST00000591534.5 | ||||||||||||||||||||||||||||||||||||||||||||||||||
| Transcript Detail |
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| Conserved Sites | mm10:m6A_site_114774;panTro5:m6A_site_28516;rheMac8:m6A_site_24950 | ||||||||||||||||||||||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||||||||||||||||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | ||||||||||||||||||||||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||||||||||||||||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | ||||||||||||||||||||||||||||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1