Details of RNA Modification Site of hg38
mod ID m6A_site_370956 mod Site chr17:50199252-50199253:-
mod Type m6A Sequence GGACCCCCCGGACCCCCCGGACCTCCCGGACCCCCTGGCCT
Motif Score 3.62240476190476
RNA Structure Motif ..((((.....)))).......((....)).
 MFE -6.90
Support Dataset Num 4 Support sub-Dataset Num 24
Support Dataset List
Support sub-Dataset List

GSM2739503, GSM2739522, GSM2739523, GSM2739534, GSM2739535, GSM2991400, GSM3083805, GSM3083806, GSM3083809, GSM3083810, GSM2332985, GSM2332986, GSM2332988, GSM2332989, GSM2332990, GSM2464901, GSM2464905, GSM2464907, GSM2464909, GSM2464911, GSM2464913, GSM2464915, GSM2464921, GSM2464923
Cell/Tissue List HeLa, HEK293T, endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000225964.9
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000225964.9ENSG00000108821.13COL1A1protein_codingcds-5
Conserved Sites susScr11:m6A_site_23963
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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