| mod ID | m6A_site_373107 | mod Site | chr17:57683753-57683754:+ | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
GACAGTGGGAGAGCAGAGGGACTGACTGCAGGCAAGCACAT |
||||||||
| Motif Score | 4.06504166666667 | ||||||||||
| RNA Structure Motif |
.......((((.........))))....... |
MFE | -3.80 | ||||||||
| Support Dataset Num | 11 | Support sub-Dataset Num | 29 | ||||||||
| Support Dataset List | |||||||||||
| Support sub-Dataset List |
GSM2739522, GSM2739523, GSM2739534, GSM2991403, GSM3083810, GSM3396437, GSM1272362, GSM1272364, GSM1272366, GSM1908206, GSM1908208, GSM1908212, GSM2010454, GSM2010456, GSM2203047, GSM2203052, GSM2283210, GSM2283211, GSM2283212, GSM2283213, GSM2283214, GSM2283215, GSM2324292, GSM2332975, GSM2332977, GSM2464905, GSM2464909, GSM2464911, GSM2464913 |
||||||||||
| Cell/Tissue List |
HeLa, HEK293T, H1A, H1B, MT4, MM6, Huh7, Jurkat, CD4T, peripheral-blood, GSC-11, endometrial |
||||||||||
| Seq Type List | m6A-seq,MeRIP-seq | ||||||||||
| Transcript ID List | ENST00000284073.7 | ||||||||||
| Transcript Detail |
|
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| Conserved Sites | susScr11:m6A_site_24206 | ||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||
| snoRNA Guide Detail | na | ||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||
| Writer Catalysis Detail | na | ||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1