Details of RNA Modification Site of hg38
mod ID m6A_site_377645 mod Site chr17:64320647-64320648:-
mod Type m6A Sequence ACAACCCAGTAGAGATGCAGACTAACAGAGAGCCAATTACA
Motif Score 3.31938095238095
RNA Structure Motif ...(((....)))..................
MFE -0.60
Support Dataset Num 1 Support sub-Dataset Num 3
Support Dataset List GSE93676
Support sub-Dataset List

GSM2460356, GSM2460358, GSM2754224
Cell/Tissue List TIME
Seq Type List MeRIP-seq
Transcript ID List ENST00000563924.6
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000563924.6ENSG00000261371.6PECAM1protein_codingutr3-16
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 29109479

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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