Details of RNA Modification Site of hg38
mod ID m6A_site_379325 mod Site chr17:67982967-67982968:+
mod Type m6A Sequence TAAGTGGTCCTGGACTACAGACTCTGTTGCCTTGAATATAA
Motif Score 3.31938095238095
RNA Structure Motif ..((..((.(.((((...)))).)))..)).
 MFE -4.90
Support Dataset Num 3 Support sub-Dataset Num 4
Support Dataset List GSE120229, GSE29714, GSE83438
Support sub-Dataset List

GSM3396438, GSM928399, GSM928401, GSM2203064
Cell/Tissue List HEK293T, Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000644067.1,ENST00000306378.11,ENST00000321892.8,ENST00000342579.8
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000644067.1ENSG00000171634.18BPTFprotein_codingutr3-31
ENST00000306378.11ENSG00000171634.18BPTFprotein_codingutr3-28
ENST00000321892.8ENSG00000171634.18BPTFprotein_codingutr3-30
ENST00000342579.8ENSG00000171634.18BPTFprotein_codingutr3-31
Conserved Sites mm10:m6A_site_118681
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 22608085, 27773535

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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