| mod ID | m6A_site_383147 | mod Site | chr17:76000941-76000942:+ | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
ATGTGTACCCAGAGCCTGGGACTGGCTGGGCTGGGCAGTGA |
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| Motif Score | 4.06504166666667 | ||||||||||||||||||||||||||||||
| RNA Structure Motif |
..((((..((((((......)))))))))). |
MFE | -13.90 | ||||||||||||||||||||||||||||
| Support Dataset Num | 15 | Support sub-Dataset Num | 42 | ||||||||||||||||||||||||||||
| Support Dataset List | |||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739506, GSM2739507, GSM2739522, GSM2739523, GSM2739534, GSM2739535, GSM2991403, GSM2987449, GSM3582049, GSM928399, GSM1272358, GSM1272360, GSM1272366, GSM1272368, GSM1339395, GSM1594131, GSM1982257, GSM2010456, GSM2283214, GSM2332975, GSM2332977, GSM2332978, GSM2417477, GSM2417479, GSM2460350, GSM2460352, GSM2460358, GSM2460360, GSM2754211, GSM2754213, GSM2754214, GSM2754216, GSM2754224, GSM2754226, GSM2754237, GSM2754238, GSM2754246, GSM2754248, GSM2464909, GSM2464911, GSM2464913, GSM2564019 |
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| Cell/Tissue List |
HeLa, HepG2, HEK293T, H1A, H1B, hESCs, GM12878, A549, MM6, CD4T, GSC-11, HEK293A-TOA, iSLK, MSC, TIME, TREX, endometrial, NB4 |
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| Seq Type List | m6A-seq,MeRIP-seq | ||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000649294.1,ENST00000569284.1,ENST00000448471.2,ENST00000567351.5,ENST00000588812.5 | ||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | na | ||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | ||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | ||||||||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1