| mod ID | m6A_site_383778 | mod Site | chr17:76387730-76387731:+ | |||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
GGAGGCTATGCTTTGGGGGGACAGGCCAGAATGAAGTCCTG |
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| Motif Score | 3.64304761904762 | |||||||||||||||||||||||||||||||||||
| RNA Structure Motif |
......(((((.........)))))...... |
MFE | -3.60 | |||||||||||||||||||||||||||||||||
| Support Dataset Num | 6 | Support sub-Dataset Num | 11 | |||||||||||||||||||||||||||||||||
| Support Dataset List | ||||||||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2987447, GSM2987448, GSM2010454, GSM2010456, GSM2203047, GSM2203051, GSM2324292, GSM2754244, GSM2464907, GSM2464909, GSM2464911 |
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| Cell/Tissue List |
HepG2, MM6, Huh7, peripheral-blood, MSC, endometrial |
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| Seq Type List | m6A-seq,MeRIP-seq | |||||||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000392496.3,ENST00000323374.8,ENST00000590959.5,ENST00000545180.5,ENST00000591762.1,ENST00000592299.5 | |||||||||||||||||||||||||||||||||||
| Transcript Detail |
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| Conserved Sites | rn6:m6A_site_21147 | |||||||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||||||||||||
| writer Num | 1 | Writer Name List | RBM15 | |||||||||||||||||||||||||||||||||
| Writer Catalysis Detail |
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| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1