Details of RNA Modification Site of hg38
mod ID m6A_site_385269 mod Site chr17:78224710-78224711:+
mod Type m6A Sequence CATTTCAAACACTGCTGTGGACCCTACTGGGTTTTTAAAAT
Motif Score 3.62240476190476
RNA Structure Motif ....(((....)))(((((....)))))...
 MFE -9.20
Support Dataset Num 6 Support sub-Dataset Num 8
Support Dataset List
Support sub-Dataset List

GSM3396438, GSM1135032, GSM1135033, GSM1166139, GSM1166140, GSM1339439, GSM1828596, GSM2460347
Cell/Tissue List HEK293T, HeLa, U2OS, A549, iSLK
Seq Type List MeRIP-seq,m6A-seq,m6A-CLIP/IP
Transcript ID List ENST00000350051.8,ENST00000374948.6,ENST00000301633.8
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000350051.8ENSG00000089685.15BIRC5protein_codingutr3-4
ENST00000374948.6ENSG00000089685.15BIRC5protein_codingutr3-3
ENST00000301633.8ENSG00000089685.15BIRC5protein_codingutr3-5
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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