Details of RNA Modification Site of hg38
mod ID m6A_site_385809 mod Site chr17:78853918-78853919:-
mod Type m6A Sequence TTGGTAAGATGTCATAATGGACCAGTCCATGTGATTTCAGT
Motif Score 3.62240476190476
RNA Structure Motif .....((((((.((((....)))))))))).
 MFE -7.90
Support Dataset Num 2 Support sub-Dataset Num 6
Support Dataset List GSE46705, GSE93911
Support sub-Dataset List

GSM1135020, GSM1135021, GSM2464907, GSM2464917, GSM2464919, GSM2464931
Cell/Tissue List HeLa, endometrial, HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000586057.5,ENST00000585421.5,ENST00000536189.6,ENST00000262768.11
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000586057.5ENSG00000035862.12TIMP2protein_codingutr3-4
ENST00000585421.5ENSG00000035862.12TIMP2protein_codingutr3-5
ENST00000536189.6ENSG00000035862.12TIMP2protein_codingutr3-5
ENST00000262768.11ENSG00000035862.12TIMP2protein_codingutr3-5
Conserved Sites mm10:m6A_site_123678
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 24284625, 30154548

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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