Details of RNA Modification Site of hg38
mod ID m6A_site_386326 mod Site chr17:79798247-79798248:-
mod Type m6A Sequence CACGTTGGGAAGAGCGGTGGACAGGAAGTGCGCGGGCCGGG
Motif Score 3.64304761904762
RNA Structure Motif .........(.(((.((.....)).))).).
 MFE -6.10
Support Dataset Num 2 Support sub-Dataset Num 8
Support Dataset List GSE102493, GSE48037
Support sub-Dataset List

GSM2739506, GSM2739507, GSM2739522, GSM2739523, GSM2739534, GSM2739535, GSM2991403, GSM1166139
Cell/Tissue List HeLa, U2OS
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000485449.1,ENST00000413392.5,ENST00000427800.2
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000485449.1ENSG00000141570.11CBX8processed_transcriptintron-1
ENST00000413392.5ENSG00000141570.11CBX8protein_codingcds-1
ENST00000427800.2ENSG00000141570.11CBX8protein_codingintron-1
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 29507755, 24209618

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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