| mod ID | m6A_site_399970 | mod Site | chr18:44701758-44701759:+ | |||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
CACCATCAAGCAGTCTGGGGACCAGAAGGTGTCCCGTGCTG |
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| Motif Score | 3.62240476190476 | |||||||||||||||||||||||||
| RNA Structure Motif |
...........(((((((....))).)))). |
MFE | -8.50 | |||||||||||||||||||||||
| Support Dataset Num | 8 | Support sub-Dataset Num | 25 | |||||||||||||||||||||||
| Support Dataset List | ||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739502, GSM2739503, GSM2884195, GSM2884197, GSM2884199, GSM1594131, GSM2203043, GSM2203044, GSM2203047, GSM2203056, GSM2203060, GSM2203063, GSM2203064, GSM2332975, GSM2417477, GSM2460348, GSM2754214, GSM2754216, GSM2464909, GSM2464911, GSM2464913, GSM2464917, GSM2464919, GSM2464921, GSM2464923 |
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| Cell/Tissue List |
HeLa, CD34, GM12878, Huh7, GSC-11, HEK293A-TOA, iSLK, endometrial |
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| Seq Type List | m6A-seq,MeRIP-seq | |||||||||||||||||||||||||
| Transcript ID List | ENST00000282030.5,ENST00000645568.1,ENST00000426838.8,ENST00000649279.1 | |||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | mm10:m6A_site_299460;panTro5:m6A_site_31846 | |||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1