Details of RNA Modification Site of hg38
mod ID m6A_site_400829 mod Site chr18:48920764-48920765:-
mod Type m6A Sequence CCTCCTCTCCCTCATCAAGGACACGGGCCTGTCCACAGGCT
Motif Score 3.64304761904762
RNA Structure Motif .............(((((......)))))..
 MFE -6.30
Support Dataset Num 3 Support sub-Dataset Num 4
Support Dataset List GSE110320, GSE129842, GSE83438
Support sub-Dataset List

GSM2987447, GSE129842, GSM2203055, GSM2203059
Cell/Tissue List HepG2, hESC-HEK293T, Huh7
Seq Type List m6A-seq,MAZTER-seq,MeRIP-seq
Transcript ID List ENST00000545051.2,ENST00000262158.7
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000545051.2ENSG00000101665.9SMAD7retained_intronexon-2
ENST00000262158.7ENSG00000101665.9SMAD7protein_codingutr3-4
Conserved Sites mm10:m6A_site_298832
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 3086759, 31257032, 27773535

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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