Details of RNA Modification Site of hg38
mod ID m6A_site_402528 mod Site chr18:58322464-58322465:+
mod Type m6A Sequence GCGACCCTATACATTTAAGGACTTTCTCCTCAGACCAAGAA
Motif Score 4.06504166666667
RNA Structure Motif ............((((.....))))......
 MFE -2.50
Support Dataset Num 1 Support sub-Dataset Num 2
Support Dataset List GSE102493
Support sub-Dataset List GSM2739502, GSM2739503
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000456986.5,ENST00000357895.9,ENST00000588494.5,ENST00000356462.10,ENST00000256830.13,ENST00000586263.5,ENST00000586268.5,ENST00000435432.6,ENST00000431212.6,ENST00000456173.6,ENST00000587634.5,ENST00000382850.8,ENST00000400345.8,ENST00000589054.5,ENST00000588066.5,ENST00000635997.1,ENST00000587190.5,ENST00000592846.5,ENST00000592601.5
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000456986.5ENSG00000049759.18NEDD4Lprotein_codingcds-7
ENST00000357895.9ENSG00000049759.18NEDD4Lprotein_codingcds-7
ENST00000588494.5ENSG00000049759.18NEDD4Lprotein_codingcds-7
ENST00000356462.10ENSG00000049759.18NEDD4Lprotein_codingcds-7
ENST00000256830.13ENSG00000049759.18NEDD4Lprotein_codingcds-7
ENST00000586263.5ENSG00000049759.18NEDD4Lprotein_codingcds-7
ENST00000586268.5ENSG00000049759.18NEDD4Lprotein_codingcds-5
ENST00000435432.6ENSG00000049759.18NEDD4Lprotein_codingcds-8
ENST00000431212.6ENSG00000049759.18NEDD4Lprotein_codingcds-6
ENST00000456173.6ENSG00000049759.18NEDD4Lprotein_codingcds-6
ENST00000587634.5ENSG00000049759.18NEDD4Lprocessed_transcriptexon-5
ENST00000382850.8ENSG00000049759.18NEDD4Lprotein_codingcds-7
ENST00000400345.8ENSG00000049759.18NEDD4Lprotein_codingcds-7
ENST00000589054.5ENSG00000049759.18NEDD4Lprotein_codingintron-1
ENST00000588066.5ENSG00000049759.18NEDD4Lprocessed_transcriptexon-6
ENST00000635997.1ENSG00000049759.18NEDD4Lprotein_codingcds-3
ENST00000587190.5ENSG00000049759.18NEDD4Lprotein_codingcds-7
ENST00000592846.5ENSG00000049759.18NEDD4Lprotein_codingcds-8
ENST00000592601.5ENSG00000049759.18NEDD4Lprocessed_transcriptexon-3
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 29507755

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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