| mod ID | m6A_site_405349 | mod Site | chr18:79528082-79528083:+ | ||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
CGCTGGAAGGCTGCGAGAGGACTCTAGTATGAGTCTCCAAC |
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| Motif Score | 4.06504166666667 | ||||||||||||||||||||||||||||||||||||||||
| RNA Structure Motif |
.............((((((......)))))) |
MFE | -7.70 | ||||||||||||||||||||||||||||||||||||||
| Support Dataset Num | 12 | Support sub-Dataset Num | 36 | ||||||||||||||||||||||||||||||||||||||
| Support Dataset List | |||||||||||||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739502, GSM2739503, GSM2991403, GSM3396437, GSM3396438, GSM928399, GSM928401, GSM1166142, GSM1272358, GSM1272360, GSM1272366, GSM1594131, GSM1723347, GSM1723351, GSM1828594, GSM2010454, GSM2283210, GSM2417477, GSM2417478, GSM2417479, GSM2460345, GSM2460347, GSM2460348, GSM2460350, GSM2460352, GSM2460354, GSM2460356, GSM2460358, GSM2754211, GSM2754214, GSM2754220, GSM2754224, GSM2754235, GSM2754237, GSM2754240, GSM2754244 |
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| Cell/Tissue List |
HeLa, HEK293T, U2OS, H1A, H1B, GM12878, LCLs, CD8T, MM6, Jurkat, HEK293A-TOA, iSLK, MSC, TIME |
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| Seq Type List | m6A-seq,MeRIP-seq,m6A-CLIP/IP | ||||||||||||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000253506.9,ENST00000590172.1,ENST00000586695.1,ENST00000329101.8,ENST00000545796.5,ENST00000397790.6,ENST00000318065.9 | ||||||||||||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | na | ||||||||||||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||||||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | ||||||||||||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||||||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | ||||||||||||||||||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1