| mod ID | m6A_site_408855 | mod Site | chr19:2037768-2037769:- | |||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
ATCCACGTGCGACCTGGAGGACTGGTCAGAACCGTTACTGT |
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| Motif Score | 4.06504166666667 | |||||||||||||||||||||||||||||||||||
| RNA Structure Motif |
.....((((.(.....).))))......... |
MFE | -5.80 | |||||||||||||||||||||||||||||||||
| Support Dataset Num | 11 | Support sub-Dataset Num | 23 | |||||||||||||||||||||||||||||||||
| Support Dataset List | ||||||||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739506, GSM2739507, GSM2739522, GSM2739523, GSM2991399, GSM2991403, GSM2987448, GSM3396437, GSM908337, GSM1135032, GSM1135033, GSM1339401, GSM1339425, GSM1339427, GSM1339429, GSM1339439, GSM1982257, GSM2010454, GSM2010456, GSM2203052, GSM2460362, GSM2464917, GSM2464927 |
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| Cell/Tissue List |
HeLa, HepG2, HEK293T, A549, MM6, Huh7, TREX, endometrial, HEC-1-A |
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| Seq Type List | m6A-seq,MeRIP-seq | |||||||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000591601.5,ENST00000587416.5,ENST00000250896.7,ENST00000589441.5,ENST00000591142.5,ENST00000309340.11 | |||||||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | panTro5:m6A_site_32662 | |||||||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1