| mod ID | m6A_site_414281 | mod Site | chr19:6415417-6415418:- | |||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
CGGAGCACCCCCACAGCAGGACTACACGAAGGCTTGGGAGG |
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| Motif Score | 4.06504166666667 | |||||||||||||||||||||||||||||||||||||||||||||
| RNA Structure Motif |
...........((((.((......)).)))) |
MFE | -1.70 | |||||||||||||||||||||||||||||||||||||||||||
| Support Dataset Num | 17 | Support sub-Dataset Num | 57 | |||||||||||||||||||||||||||||||||||||||||||
| Support Dataset List | ||||||||||||||||||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739502, GSM2739503, GSM2739507, GSM2739522, GSM2884195, GSM2884197, GSM2884199, GSM3396437, GSM3396438, GSM908331, GSM1135020, GSM1135021, GSM1166139, GSM1166143, GSM1166144, GSM1339393, GSM1339405, GSM1339407, GSM1339427, GSM1339439, GSM1723349, GSM1723351, GSM1908206, GSM1908208, GSM1908210, GSM1908212, GSM1982257, GSM1982263, GSM2010454, GSM2010456, GSM2203047, GSM2203055, GSM2203056, GSM2203059, GSM2283210, GSM2283212, GSM2324298, GSM2417478, GSM2460345, GSM2460348, GSM2460350, GSM2460352, GSM2460354, GSM2460356, GSM2460362, GSM2754211, GSM2754213, GSM2754214, GSM2754216, GSM2754220, GSM2754226, GSM2754235, GSM2754237, GSM2754238, GSM2754240, GSM2754244, GSM2464911 |
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| Cell/Tissue List |
HeLa, CD34, HEK293T, HepG2, U2OS, hNPCs, fibroblasts, A549, LCLs, MT4, H1299, MM6, Huh7, Jurkat, peripheral-blood, HEK293A-TOA, iSLK, MSC, TIME, TREX, endometrial |
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| Seq Type List | m6A-seq,MeRIP-seq | |||||||||||||||||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000619396.4,ENST00000595223.5,ENST00000594496.5,ENST00000594745.5,ENST00000599642.1,ENST00000597656.5,ENST00000600480.1,ENST00000398148.7 | |||||||||||||||||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | mm10:m6A_site_273708 | |||||||||||||||||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||||||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||||||||||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1