| mod ID | m6A_site_414399 | mod Site | chr19:6466873-6466874:+ | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
TCAGGGTGCTGGGGCTCGGGACCCACCCCCCTGCTTGCGGA |
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| Motif Score | 3.62240476190476 | ||||||||||||||||||||
| RNA Structure Motif |
..((.((((...((......)))))).)).. |
MFE | -11.30 | ||||||||||||||||||
| Support Dataset Num | 6 | Support sub-Dataset Num | 32 | ||||||||||||||||||
| Support Dataset List | |||||||||||||||||||||
| Support sub-Dataset List |
GSM2987447, GSM2987448, GSM2987449, GSM3582054, GSM1272358, GSM1272360, GSM1272362, GSM1272364, GSM1272366, GSM1272368, GSM1339429, GSM2460345, GSM2460347, GSM2460348, GSM2460360, GSM2754211, GSM2754213, GSM2754214, GSM2754216, GSM2754226, GSM2754235, GSM2754237, GSM2754238, GSM2754240, GSM2464905, GSM2464909, GSM2464911, GSM2464913, GSM2464915, GSM2464921, GSM2464927, GSM2464931 |
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| Cell/Tissue List |
HepG2, A549, H1A, H1B, iSLK, TREX, endometrial, HEC-1-A |
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| Seq Type List | m6A-seq,MeRIP-seq | ||||||||||||||||||||
| Transcript ID List | ENST00000356762.7,ENST00000598494.5,ENST00000600229.6 | ||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | na | ||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||||||||||||
| snoRNA Guide Detail | na | ||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||||||||||||
| Writer Catalysis Detail | na | ||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
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School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1