| mod ID | m6A_site_414502 | mod Site | chr19:6583415-6583416:- | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
TCTTACGGCATTTAATATGGACTGCACACTGTTTTATCCCA |
||||||||
| Motif Score | 4.06504166666667 | ||||||||||
| RNA Structure Motif |
..(((.((......)).)))........... |
MFE | -1.50 | ||||||||
| Support Dataset Num | 7 | Support sub-Dataset Num | 26 | ||||||||
| Support Dataset List | |||||||||||
| Support sub-Dataset List |
GSM3582046, GSM3582047, GSM3582048, GSM3582049, GSM908337, GSM1339403, GSM1339425, GSM1339439, GSM1594131, GSM1723347, GSM1723349, GSM1723351, GSM2324308, GSM2460345, GSM2460347, GSM2460348, GSM2460350, GSM2460360, GSM2460362, GSM2754211, GSM2754213, GSM2754214, GSM2754226, GSM2754235, GSM2754237, GSM2754240 |
||||||||||
| Cell/Tissue List |
HeLa, HepG2, fibroblasts, A549, GM12878, LCLs, peripheral-blood, iSLK, TREX |
||||||||||
| Seq Type List | MeRIP-seq,m6A-seq | ||||||||||
| Transcript ID List | ENST00000423145.7 | ||||||||||
| Transcript Detail |
|
||||||||||
| Conserved Sites | panTro5:m6A_site_33193 | ||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||
| snoRNA Guide Detail | na | ||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||
| Writer Catalysis Detail | na | ||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1