Details of RNA Modification Site of hg38
mod ID m6A_site_4170 mod Site chr1:6231906-6231907:-
mod Type m6A Sequence GGTTTTACTGGAGTATTGGAACTCAGGTATAATATTAAATA
Motif Score 3.37338095238095
RNA Structure Motif ((((.((((......)))).)))).......
 MFE -6.30
Support Dataset Num 2 Support sub-Dataset Num 3
Support Dataset List GSE37003, GSE46705
Support sub-Dataset List

GSM908337, GSM1135020, GSM1135033
Cell/Tissue List HepG2, HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000489498.5,ENST00000343813.10,ENST00000474756.1
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000489498.5ENSG00000116237.16ICMTnonsense_mediated_decayutr3-5
ENST00000343813.10ENSG00000116237.16ICMTprotein_codingcds-4
ENST00000474756.1ENSG00000116237.16ICMTnonsense_mediated_decayutr3-3
Conserved Sites mm10:m6A_site_446517;susScr11:m6A_site_111957
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 22575960, 24284625

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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