| mod ID | m6A_site_418451 | mod Site | chr19:10160024-10160025:- | |||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
TCGCGCCAAAACAGTCATGAACTCCAAGGTAAACATCTGCC |
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| Motif Score | 3.37338095238095 | |||||||||||||||||||||||||||||||||||
| RNA Structure Motif |
............................... |
MFE | 0.00 | |||||||||||||||||||||||||||||||||
| Support Dataset Num | 10 | Support sub-Dataset Num | 25 | |||||||||||||||||||||||||||||||||
| Support Dataset List | ||||||||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739502, GSM2739503, GSM2739522, GSM2987447, GSM1339393, GSM1982263, GSM2203043, GSM2203044, GSM2203047, GSM2203051, GSM2203052, GSM2203056, GSM2203059, GSM2203060, GSM2283211, GSM2324292, GSM2324298, GSM2324308, GSM2324310, GSM2332987, GSM2332990, GSM2464921, GSM2464927, GSM2564019, GSM2564022 |
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| Cell/Tissue List |
HeLa, HepG2, hNPCs, H1299, Huh7, Jurkat, peripheral-blood, HEK293T, endometrial, HEC-1-A, NB4, MM6 |
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| Seq Type List | m6A-seq,MeRIP-seq | |||||||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000592705.5,ENST00000585843.1,ENST00000359526.9,ENST00000591764.1,ENST00000340748.8,ENST00000589349.5 | |||||||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | rheMac8:m6A_site_28976 | |||||||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1