| mod ID | m6A_site_418503 | mod Site | chr19:10222503-10222504:- | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
TGGCTGGGGAGGACTTTGGGACTCTTGATGCAAGGCGCAAC |
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| Motif Score | 4.06504166666667 | ||||||||||||||||||||
| RNA Structure Motif |
.(((((..(....)..))))).......... |
MFE | -6.30 | ||||||||||||||||||
| Support Dataset Num | 11 | Support sub-Dataset Num | 25 | ||||||||||||||||||
| Support Dataset List | |||||||||||||||||||||
| Support sub-Dataset List |
GSM2739534, GSM2739535, GSM2991403, GSM1272364, GSM1723347, GSM1723349, GSM1723351, GSM2010454, GSM2010456, GSM2203056, GSM2203060, GSM2283214, GSM2332975, GSM2417477, GSM2417478, GSM2460354, GSM2464905, GSM2464907, GSM2464909, GSM2464911, GSM2464913, GSM2464915, GSM2464917, GSM2464919, GSM2564019 |
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| Cell/Tissue List |
HeLa, H1B, LCLs, MM6, Huh7, CD4T, GSC-11, HEK293A-TOA, MSC, endometrial, NB4 |
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| Seq Type List | m6A-seq,MeRIP-seq | ||||||||||||||||||||
| Transcript ID List | ENST00000646641.1,ENST00000592342.5,ENST00000588952.5 | ||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | na | ||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||||||||||||
| snoRNA Guide Detail | na | ||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||||||||||||
| Writer Catalysis Detail | na | ||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1