Details of RNA Modification Site of hg38
mod ID m6A_site_419065 mod Site chr19:10486196-10486197:-
mod Type m6A Sequence GGCACTTCCCCACCGGATGGACAGTTATTTTGTTGATAAGT
Motif Score 3.64304761904762
RNA Structure Motif .(((.....)))(.(((((.....))))).)
 MFE -3.40
Support Dataset Num 8 Support sub-Dataset Num 11
Support Dataset List
Support sub-Dataset List

GSM3396437, GSM3396438, GSM3582054, GSE129842, GSM928399, GSM928401, GSM1339393, GSM1339439, GSM1982257, GSM2203060, GSM2564019
Cell/Tissue List

HEK293T, A549, hESC-HEK293T, hNPCs, Huh7, NB4
Seq Type List MeRIP-seq,MAZTER-seq,m6A-seq
Transcript ID List ENST00000592478.5,ENST00000393623.6,ENST00000171111.10
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000592478.5ENSG00000079999.14KEAP1protein_codingutr3-3
ENST00000393623.6ENSG00000079999.14KEAP1protein_codingutr3-6
ENST00000171111.10ENSG00000079999.14KEAP1protein_codingutr3-6
Conserved Sites mm10:m6A_site_618823;rn6:m6A_site_95889;susScr11:m6A_site_68877
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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