| mod ID | m6A_site_419470 | mod Site | chr19:10687648-10687649:+ | ||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
AGGCAGCTACTCCTACTCGAACTCCTACAACTCTCCCGGGG |
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| Motif Score | 3.37338095238095 | ||||||||||||||||||||||||||||||||||||||||
| RNA Structure Motif |
............................... |
MFE | 0.00 | ||||||||||||||||||||||||||||||||||||||
| Support Dataset Num | 14 | Support sub-Dataset Num | 40 | ||||||||||||||||||||||||||||||||||||||
| Support Dataset List | |||||||||||||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739502, GSM2739503, GSM2884195, GSM2884197, GSM2884199, GSM908331, GSM1135020, GSM1135021, GSM1166139, GSM1339393, GSM1339395, GSM1339401, GSM1339405, GSM1339425, GSM1339427, GSM1339429, GSM1339439, GSM1723349, GSM1908206, GSM1982257, GSM2010454, GSM2010456, GSM2203047, GSM2203051, GSM2203056, GSM2460348, GSM2460350, GSM2460352, GSM2460354, GSM2460356, GSM2460360, GSM2460362, GSM2754211, GSM2754220, GSM2754222, GSM2754226, GSM2754235, GSM2754246, GSM2464917, GSM2564019 |
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| Cell/Tissue List |
HeLa, CD34, HepG2, U2OS, hNPCs, hESCs, HEK293T, fibroblasts, A549, LCLs, MT4, MM6, Huh7, iSLK, MSC, TIME, TREX, endometrial, NB4 |
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| Seq Type List | m6A-seq,MeRIP-seq | ||||||||||||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000591649.5,ENST00000586544.1,ENST00000590869.1,ENST00000590261.5,ENST00000587928.5,ENST00000449870.5,ENST00000588657.5 | ||||||||||||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | rheMac8:m6A_site_29102;susScr11:m6A_site_68978 | ||||||||||||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||||||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | ||||||||||||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||||||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | ||||||||||||||||||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1