| mod ID | m6A_site_422917 | mod Site | chr19:12792380-12792381:+ | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
GCGCCGGGGCTGCCGTCGGGACCGGGAGCTCGTACCCGACG |
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| Motif Score | 3.62240476190476 | ||||||||||
| RNA Structure Motif |
.(((((.(((.......))).)))))..... |
MFE | -12.80 | ||||||||
| Support Dataset Num | 20 | Support sub-Dataset Num | 70 | ||||||||
| Support Dataset List | |||||||||||
| Support sub-Dataset List |
GSM2739502, GSM2739503, GSM2739522, GSM2739523, GSM2884195, GSM2884197, GSM2884199, GSM2987447, GSM2987448, GSM2987449, GSM3083806, GSM3083809, GSM3083810, GSM3582046, GSM3582047, GSM3582048, GSM3582049, GSM3582052, GSM3582053, GSM3582054, GSM908331, GSM1135020, GSM1135021, GSM1166139, GSM1723349, GSM1723351, GSM1908206, GSM1908210, GSM1982257, GSM1982263, GSM2010454, GSM2010456, GSM2283214, GSM2324308, GSM2332975, GSM2332977, GSM2332978, GSM2332985, GSM2332986, GSM2332989, GSM2332990, GSM2460345, GSM2460348, GSM2460350, GSM2460352, GSM2460354, GSM2460360, GSM2460362, GSM2754211, GSM2754213, GSM2754214, GSM2754216, GSM2754220, GSM2754222, GSM2754224, GSM2754226, GSM2754235, GSM2754237, GSM2754238, GSM2754240, GSM2754244, GSM2754246, GSM2754248, GSM2464909, GSM2464921, GSM2464923, GSM2464931, GSM2564019, GSM2564022, GSM2602070 |
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| Cell/Tissue List |
HeLa, CD34, HepG2, A549, U2OS, LCLs, MT4, H1299, MM6, CD4T, peripheral-blood, GSC-11, HEK293T, iSLK, MSC, TREX, TIME, endometrial, HEC-1-A, NB4, AML |
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| Seq Type List | m6A-seq,MeRIP-seq,miCLIP | ||||||||||
| Transcript ID List | ENST00000302754.6 | ||||||||||
| Transcript Detail |
|
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| Conserved Sites | mm10:m6A_site_598861;panTro5:m6A_site_33758;rn6:m6A_site_49811 | ||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||
| snoRNA Guide Detail | na | ||||||||||
| writer Num | 1 | Writer Name List | RBM15 | ||||||||
| Writer Catalysis Detail |
|
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| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1