| mod ID | m6A_site_423125 | mod Site | chr19:12884864-12884865:- | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
AGCCCTGCCCTGGCACTTGGACTCTCCTAGTGACTGGGGAT |
||||||||
| Motif Score | 4.06504166666667 | ||||||||||
| RNA Structure Motif |
......((((((.(((...))).)))).)). |
MFE | -7.00 | ||||||||
| Support Dataset Num | 7 | Support sub-Dataset Num | 13 | ||||||||
| Support Dataset List | |||||||||||
| Support sub-Dataset List |
GSM3396438, GSM1272358, GSM1272360, GSM1272362, GSM1272364, GSM1272366, GSM1272368, GSM1594131, GSM2010454, GSM2010456, GSM2324292, GSM2460360, GSM2564022 |
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| Cell/Tissue List |
HEK293T, H1A, H1B, GM12878, MM6, peripheral-blood, TREX |
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| Seq Type List | MeRIP-seq,m6A-seq | ||||||||||
| Transcript ID List | ENST00000264834.5 | ||||||||||
| Transcript Detail |
|
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| Conserved Sites | susScr11:m6A_site_68300 | ||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||
| snoRNA Guide Detail | na | ||||||||||
| writer Num | 1 | Writer Name List | RBM15 | ||||||||
| Writer Catalysis Detail |
|
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| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
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School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1