Details of RNA Modification Site of hg38
mod ID m6A_site_425300 mod Site chr19:15247680-15247681:-
mod Type m6A Sequence CATGCCCAGATTCCCACAGGACAATTGGGGAGCTGCTGGCA
Motif Score 3.64304761904762
RNA Structure Motif .(((.(((((.(((.....))))))))))).
MFE -10.70
Support Dataset Num 2 Support sub-Dataset Num 2
Support Dataset List GSE46705GSE90914
Support sub-Dataset List GSM1135021, GSM2417478
Cell/Tissue List HeLa, HEK293A-TOA
Seq Type List m6A-seq
Transcript ID List ENST00000263377.6,ENST00000371835.8
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000263377.6ENSG00000141867.17BRD4protein_codingintron-11
ENST00000371835.8ENSG00000141867.17BRD4protein_codingutr3-12
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 2428462528525753

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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