| mod ID | m6A_site_435713 | mod Site | chr19:36032196-36032197:- | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
ACCTGCCCCCCTCCCTAAGGACTACGGTAACCACTGTCCCC |
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| Motif Score | 4.06504166666667 | ||||||||||||||||||||||||||||||
| RNA Structure Motif |
....(((.....)))....((((....)))) |
MFE | -2.30 | ||||||||||||||||||||||||||||
| Support Dataset Num | 6 | Support sub-Dataset Num | 19 | ||||||||||||||||||||||||||||
| Support Dataset List | |||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM1272362, GSM1272364, GSM2010456, GSM2283210, GSM2283211, GSM2283212, GSM2283213, GSM2332975, GSM2332978, GSM2464905, GSM2464907, GSM2464909, GSM2464911, GSM2464913, GSM2464915, GSM2464917, GSM2464919, GSM2464923, GSM2483505 |
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| Cell/Tissue List |
H1A, H1B, MM6, Jurkat, GSC-11, endometrial, GSCs |
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| Seq Type List | m6A-seq | ||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000592017.5,ENST00000360535.9,ENST00000593074.5,ENST00000590559.2,ENST00000586457.1 | ||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | mm10:m6A_site_541276 | ||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | ||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | ||||||||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1