| mod ID | m6A_site_44547 | mod Site | chr1:110339915-110339916:+ | |||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
GGGACGGCGCGGAATACAAGACTCTGAAGATAAGCGAGTTG |
|||||||||||||||||||||||||||||||||||||||||||
| Motif Score | 3.31938095238095 | |||||||||||||||||||||||||||||||||||||||||||||
| RNA Structure Motif |
....((((.........)))).......... |
MFE | -1.30 | |||||||||||||||||||||||||||||||||||||||||||
| Support Dataset Num | 20 | Support sub-Dataset Num | 57 | |||||||||||||||||||||||||||||||||||||||||||
| Support Dataset List | ||||||||||||||||||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739502, GSM2739503, GSM2739506, GSM2739507, GSM2739522, GSM2739523, GSM2739535, GSM2991403, GSM2884195, GSM2884197, GSM2884199, GSM2987447, GSM3083810, GSM3396437, GSM3396438, GSM4024128, GSM3582048, GSM3582049, GSM928399, GSM928401, GSM928403, GSM908329, GSM908331, GSM908333, GSM908337, GSM1135020, GSM1135021, GSM1594131, GSM2010454, GSM2010456, GSM2283210, GSM2283211, GSM2324308, GSM2332975, GSM2332977, GSM2332978, GSM2332985, GSM2332986, GSM2332987, GSM2332988, GSM2332989, GSM2332990, GSM2417477, GSM2417478, GSM2417479, GSM2460345, GSM2460347, GSM2460348, GSM2460358, GSM2460360, GSM2754211, GSM2754213, GSM2754216, GSM2754220, GSM2754238, GSM2754240, GSM2464931 |
|||||||||||||||||||||||||||||||||||||||||||||
| Cell/Tissue List |
HeLa, CD34, HepG2, HEK293T, GM12878, MM6, Jurkat, peripheral-blood, GSC-11, HEK293A-TOA, iSLK, TIME, TREX, MSC, HEC-1-A |
|||||||||||||||||||||||||||||||||||||||||||||
| Seq Type List | m6A-seq,MeRIP-seq,DART-seq | |||||||||||||||||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000650953.1,ENST00000652342.1,ENST00000617047.1,ENST00000369784.8,ENST00000652747.1,ENST00000602849.1,ENST00000618772.4,ENST00000487146.7 | |||||||||||||||||||||||||||||||||||||||||||||
| Transcript Detail |
|
|||||||||||||||||||||||||||||||||||||||||||||
| Conserved Sites | mm10:m6A_site_398868;rn6:m6A_site_58250 | |||||||||||||||||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||||||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||||||||||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1