| mod ID | m6A_site_446891 | mod Site | chr19:48325568-48325569:+ | |||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
CACGGAGGCCCGAGCGAGGGACAAGACTCCGACTCCAGCTC |
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| Motif Score | 3.64304761904762 | |||||||||||||||||||||||||||||||||||
| RNA Structure Motif |
......(((((.(((......))))).))). |
MFE | -6.40 | |||||||||||||||||||||||||||||||||
| Support Dataset Num | 20 | Support sub-Dataset Num | 65 | |||||||||||||||||||||||||||||||||
| Support Dataset List | ||||||||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739506, GSM2739507, GSM2739522, GSM2739523, GSM2739534, GSM2739535, GSM2991403, GSM2987448, GSM3083805, GSM3083806, GSM3083809, GSM3083810, GSM3582052, GSM3582053, GSM3582054, GSE129842, GSM1135020, GSM1135021, GSM1135032, GSM1272364, GSM1339405, GSM1339425, GSM1339429, GSM1339439, GSM1723349, GSM1982257, GSM1982263, GSM2010454, GSM2010456, GSM2283211, GSM2283214, GSM2283215, GSM2324292, GSM2324298, GSM2324308, GSM2324310, GSM2332975, GSM2332977, GSM2332978, GSM2417477, GSM2460352, GSM2460354, GSM2460356, GSM2460358, GSM2460360, GSM2460362, GSM2754213, GSM2754214, GSM2754226, GSM2754248, GSM2464901, GSM2464903, GSM2464905, GSM2464907, GSM2464909, GSM2464911, GSM2464913, GSM2464915, GSM2464921, GSM2464927, GSM2464931, GSM2483505, GSM2564019, GSM2564022, GSM2602072 |
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| Cell/Tissue List |
HeLa, HepG2, A549, hESC-HEK293T, H1B, fibroblasts, LCLs, H1299, MM6, Jurkat, CD4T, peripheral-blood, GSC-11, HEK293A-TOA, MSC, TIME, TREX, iSLK, endometrial, HEC-1-A, GSCs, NB4, AML |
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| Seq Type List | m6A-seq,MeRIP-seq,MAZTER-seq,miCLIP | |||||||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000597529.1,ENST00000270221.11,ENST00000599255.5,ENST00000594198.1,ENST00000599704.5,ENST00000596315.5 | |||||||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | susScr11:m6A_site_108320 | |||||||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1