Details of RNA Modification Site of hg38
mod ID m6A_site_449697 mod Site chr19:49929796-49929797:+
mod Type m6A Sequence GGAGGTGTAAAGGCAATTGGACCGCTCGGGCGACGTAGCAT
Motif Score 3.62240476190476
RNA Structure Motif .................(((....)))....
 MFE -2.70
Support Dataset Num 6 Support sub-Dataset Num 13
Support Dataset List
Support sub-Dataset List

GSM2739506, GSM2739507, GSM2739522, GSM2739523, GSM2739534, GSM2739535, GSM2991403, GSM3582052, GSM1135020, GSM1135021, GSM2010456, GSM2324308, GSM2417477
Cell/Tissue List

HeLa, A549, MM6, peripheral-blood, HEK293A-TOA
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000597227.5,ENST00000600336.1,ENST00000423777.7,ENST00000595125.5
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000597227.5ENSG00000169136.11ATF5protein_codingutr5-2
ENST00000600336.1ENSG00000169136.11ATF5protein_codingintron-1
ENST00000423777.7ENSG00000169136.11ATF5protein_codingintron-1
ENST00000595125.5ENSG00000169136.11ATF5protein_codingintron-2
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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