Details of RNA Modification Site of hg38
mod ID m6A_site_455802 mod Site chr19:56814130-56814131:-
mod Type m6A Sequence GAGCCCATTGGAGAGGCTGGACAGCCAAATGGAGAGGCCGA
Motif Score 3.64304761904762
RNA Structure Motif .........((((....))))..........
 MFE -5.00
Support Dataset Num 4 Support sub-Dataset Num 13
Support Dataset List
Support sub-Dataset List

GSM2987447, GSM2987448, GSM2987449, GSM1166142, GSM1339393, GSM2464905, GSM2464907, GSM2464909, GSM2464911, GSM2464913, GSM2464915, GSM2464917, GSM2464919
Cell/Tissue List HepG2, U2OS, hNPCs, endometrial
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000649233.1,ENST00000649876.1,ENST00000650102.1,ENST00000595671.5,ENST00000599534.5,ENST00000593695.5,ENST00000649428.1,ENST00000593711.6,ENST00000649735.1,ENST00000326441.15,ENST00000597281.5,ENST00000629319.2,ENST00000599577.5,ENST00000649680.1,ENST00000601070.5,ENST00000647621.1,ENST00000648694.1,ENST00000650111.1,ENST00000650632.1,ENST00000599935.5,ENST00000598410.5
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000649233.1ENSG00000198300.14PEG3protein_codingcds-11
ENST00000649876.1ENSG00000198300.14PEG3protein_codingcds-11
ENST00000650102.1ENSG00000198300.14PEG3protein_codingcds-11
ENST00000595671.5ENSG00000269699.6ZIM2nonsense_mediated_decayintron-7
ENST00000599534.5ENSG00000198300.14PEG3protein_codingcds-7
ENST00000593695.5ENSG00000198300.14PEG3protein_codingcds-9
ENST00000649428.1ENSG00000198300.14PEG3protein_codingcds-9
ENST00000593711.6ENSG00000269699.6ZIM2protein_codingintron-7
ENST00000649735.1ENSG00000198300.14PEG3protein_codingutr3-8
ENST00000326441.15ENSG00000198300.14PEG3protein_codingcds-10
ENST00000597281.5ENSG00000269699.6ZIM2nonsense_mediated_decayintron-7
ENST00000629319.2ENSG00000269699.6ZIM2protein_codingintron-8
ENST00000599577.5ENSG00000198300.14PEG3protein_codingcds-9
ENST00000649680.1ENSG00000198300.14PEG3protein_codingcds-10
ENST00000601070.5ENSG00000269699.6ZIM2protein_codingintron-7
ENST00000647621.1ENSG00000198300.14PEG3protein_codingcds-8
ENST00000648694.1ENSG00000198300.14PEG3protein_codingcds-10
ENST00000650111.1ENSG00000269699.6ZIM2nonsense_mediated_decayintron-8
ENST00000650632.1ENSG00000198300.14PEG3protein_codingcds-11
ENST00000599935.5ENSG00000269699.6ZIM2protein_codingintron-8
ENST00000598410.5ENSG00000198300.14PEG3protein_codingcds-9
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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