Details of RNA Modification Site of hg38
mod ID m6A_site_455858 mod Site chr19:56822820-56822821:-
mod Type m6A Sequence CTTAGGTGACCGGGACTGGGACCGGAGGGGCAGAAGCAGAG
Motif Score 3.62240476190476
RNA Structure Motif ((..((((........))))....)).....
 MFE -7.30
Support Dataset Num 2 Support sub-Dataset Num 9
Support Dataset List GSE110320, GSE93911
Support sub-Dataset List

GSM2987447, GSM2464905, GSM2464907, GSM2464909, GSM2464911, GSM2464913, GSM2464915, GSM2464917, GSM2464919
Cell/Tissue List HepG2, endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000649876.1,ENST00000629319.2,ENST00000600833.2,ENST00000599935.5,ENST00000601070.5,ENST00000650111.1,ENST00000649428.1,ENST00000326441.15,ENST00000593695.5,ENST00000599577.5,ENST00000595671.5,ENST00000649233.1,ENST00000647852.1,ENST00000647621.1,ENST00000599534.5,ENST00000593711.6,ENST00000597281.5,ENST00000649680.1,ENST00000650102.1,ENST00000650632.1,ENST00000593931.1,ENST00000649735.1,ENST00000648694.1,ENST00000598410.5
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000649876.1ENSG00000198300.14PEG3protein_codingcds-7
ENST00000629319.2ENSG00000269699.6ZIM2protein_codingcds-6
ENST00000600833.2ENSG00000198300.14PEG3protein_codingcds-3
ENST00000599935.5ENSG00000269699.6ZIM2protein_codingcds-6
ENST00000601070.5ENSG00000269699.6ZIM2protein_codingcds-5
ENST00000650111.1ENSG00000269699.6ZIM2nonsense_mediated_decaycds-6
ENST00000649428.1ENSG00000198300.14PEG3protein_codingcds-5
ENST00000326441.15ENSG00000198300.14PEG3protein_codingcds-6
ENST00000593695.5ENSG00000198300.14PEG3protein_codingcds-5
ENST00000599577.5ENSG00000198300.14PEG3protein_codingcds-5
ENST00000595671.5ENSG00000269699.6ZIM2nonsense_mediated_decaycds-4
ENST00000649233.1ENSG00000198300.14PEG3protein_codingcds-7
ENST00000647852.1ENSG00000198300.14PEG3protein_codingcds-7
ENST00000647621.1ENSG00000198300.14PEG3protein_codingcds-5
ENST00000599534.5ENSG00000198300.14PEG3protein_codingcds-3
ENST00000593711.6ENSG00000269699.6ZIM2protein_codingcds-5
ENST00000597281.5ENSG00000269699.6ZIM2nonsense_mediated_decaycds-5
ENST00000649680.1ENSG00000198300.14PEG3protein_codingcds-6
ENST00000650102.1ENSG00000198300.14PEG3protein_codingcds-7
ENST00000650632.1ENSG00000198300.14PEG3protein_codingcds-7
ENST00000593931.1ENSG00000269699.6ZIM2protein_codingcds-3
ENST00000649735.1ENSG00000198300.14PEG3protein_codingcds-5
ENST00000648694.1ENSG00000198300.14PEG3protein_codingcds-6
ENST00000598410.5ENSG00000198300.14PEG3protein_codingcds-5
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 3086759, 30154548

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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