| mod ID | m6A_site_45786 | mod Site | chr1:112917454-112917455:- | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
GTAGCCCGACCATCTATGGGACTTGTAGCCAACACAAAGCC |
||||||||||||||||||
| Motif Score | 4.06504166666667 | ||||||||||||||||||||
| RNA Structure Motif |
....(((....)))................. |
MFE | -1.50 | ||||||||||||||||||
| Support Dataset Num | 3 | Support sub-Dataset Num | 5 | ||||||||||||||||||
| Support Dataset List | GSE120229, GSE71154, GSE98623 | ||||||||||||||||||||
| Support sub-Dataset List |
GSM3396437, GSM3396438, GSM1828594, GSM1828596, GSM2602070 |
||||||||||||||||||||
| Cell/Tissue List | HEK293T, CD8T, A549, AML | ||||||||||||||||||||
| Seq Type List | MeRIP-seq,m6A-CLIP/IP,miCLIP | ||||||||||||||||||||
| Transcript ID List | ENST00000458229.5,ENST00000369626.7,ENST00000538576.5 | ||||||||||||||||||||
| Transcript Detail |
|
||||||||||||||||||||
| Conserved Sites | mm10:m6A_site_397641;panTro5:m6A_site_3788;rheMac8:m6A_site_3207;susScr11:m6A_site_93835 | ||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||||||||||||
| snoRNA Guide Detail | na | ||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||||||||||||
| Writer Catalysis Detail | na | ||||||||||||||||||||
| PubMed ID | 26404942, 28920958 |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
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School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1