Details of RNA Modification Site of hg38
mod ID m6A_site_461106 mod Site chr2:11192482-11192483:-
mod Type m6A Sequence GTGTCATAAAGATCATATGGACAAAAAGGAGGAGATTATAG
Motif Score 3.64304761904762
RNA Structure Motif ...............................
 MFE 0.00
Support Dataset Num 2 Support sub-Dataset Num 4
Support Dataset List GSE102493, GSE129842
Support sub-Dataset List

GSM2739502, GSM2739503, GSM2991416, GSE129842
Cell/Tissue List HeLa, hESC-HEK293T
Seq Type List m6A-seq,MAZTER-seq
Transcript ID List ENST00000616279.4,ENST00000315872.11,ENST00000401753.5
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000616279.4ENSG00000134318.14ROCK2protein_codingcds-30
ENST00000315872.11ENSG00000134318.14ROCK2protein_codingcds-31
ENST00000401753.5ENSG00000134318.14ROCK2protein_codingcds-27
Conserved Sites mm10:m6A_site_129911
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 29507755, 31257032

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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