Details of RNA Modification Site of hg38
mod ID m6A_site_461199 mod Site chr2:11286590-11286591:-
mod Type m6A Sequence TCTACAGATGAAGGCAGAAGACTATGATGTTGTAAAAGTTA
Motif Score 3.31938095238095
RNA Structure Motif ..............(((......))).....
 MFE -0.20
Support Dataset Num 1 Support sub-Dataset Num 2
Support Dataset List GSE102493
Support sub-Dataset List GSM2739502, GSM2739503
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000315872.11,ENST00000616279.4,ENST00000261535.7,ENST00000431087.1,ENST00000462366.1
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000315872.11ENSG00000134318.14ROCK2protein_codingcds-3
ENST00000616279.4ENSG00000134318.14ROCK2protein_codingutr5-3
ENST00000261535.7ENSG00000134318.14ROCK2nonsense_mediated_decaycds-3
ENST00000431087.1ENSG00000134318.14ROCK2protein_codingcds-2
ENST00000462366.1ENSG00000134318.14ROCK2processed_transcriptexon-3
Conserved Sites mm10:m6A_site_129838
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 29507755

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

♥ Click the "Show Detail" button to show detailed list and click again to hide it.

© 2023, Qu Lab. School of Life Science, Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1