Details of RNA Modification Site of hg38
mod ID m6A_site_463304 mod Site chr2:24216172-24216173:-
mod Type m6A Sequence GCCGGTGCAGATGATTGGGGACATCCTGGCCGCTGAGCTGT
Motif Score 3.64304761904762
RNA Structure Motif ..(((.((.(((((.....))))).))))).
 MFE -5.80
Support Dataset Num 2 Support sub-Dataset Num 3
Support Dataset List GSE102493, GSE107954
Support sub-Dataset List

GSM2739502, GSM2884195, GSM2884199
Cell/Tissue List HeLa, CD34
Seq Type List m6A-seq
Transcript ID List ENST00000355123.8,ENST00000361999.7,ENST00000622089.4
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000355123.8ENSG00000198399.14ITSN2protein_codingcds-32
ENST00000361999.7ENSG00000198399.14ITSN2protein_codingcds-31
ENST00000622089.4ENSG00000198399.14ITSN2protein_codingcds-31
Conserved Sites mm10:m6A_site_128025
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 29507755, 30065315

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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