Details of RNA Modification Site of hg38
mod ID m6A_site_468892 mod Site chr2:38070501-38070502:-
mod Type m6A Sequence GAGATTTTTTTGAGTCAAAGACTTAAAGGGCCCAATGAATT
Motif Score 3.31938095238095
RNA Structure Motif .((((((((((...)))))))))).......
 MFE -7.00
Support Dataset Num 4 Support sub-Dataset Num 7
Support Dataset List
Support sub-Dataset List

GSM2991416, GSM1339425, GSM1339427, GSM1339429, GSM1339439, GSM1594131, GSM1828596
Cell/Tissue List HeLa, A549, GM12878
Seq Type List m6A-seq,m6A-CLIP/IP
Transcript ID List ENST00000614273.1,ENST00000494864.1,ENST00000491456.1,ENST00000610745.5
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000614273.1ENSG00000138061.12CYP1B1protein_codingutr3-3
ENST00000494864.1ENSG00000138061.12CYP1B1protein_codingutr3-2
ENST00000491456.1ENSG00000138061.12CYP1B1processed_transcriptintron-1
ENST00000610745.5ENSG00000138061.12CYP1B1protein_codingutr3-3
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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