| mod ID | m6A_site_469199 | mod Site | chr2:38750885-38750886:- | |||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
CCATTTTGCGCACATTGAGGACCGTGGTGGCGCATTTCCTC |
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| Motif Score | 3.62240476190476 | |||||||||||||||||||||||||||||||||||||||||||||
| RNA Structure Motif |
.(((((.(((((.(...).)))))))))).. |
MFE | -9.60 | |||||||||||||||||||||||||||||||||||||||||||
| Support Dataset Num | 12 | Support sub-Dataset Num | 48 | |||||||||||||||||||||||||||||||||||||||||||
| Support Dataset List | ||||||||||||||||||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739506, GSM2739534, GSM2739535, GSM2991403, GSM2987449, GSM3582053, GSM3582054, GSM908331, GSM1982257, GSM2010456, GSM2203044, GSM2203047, GSM2203051, GSM2203056, GSM2203059, GSM2283210, GSM2283212, GSM2283214, GSM2283215, GSM2324298, GSM2324308, GSM2324310, GSM2332975, GSM2460347, GSM2460348, GSM2460350, GSM2460352, GSM2460354, GSM2460356, GSM2460358, GSM2460360, GSM2754211, GSM2754213, GSM2754214, GSM2754216, GSM2754220, GSM2754224, GSM2754235, GSM2754237, GSM2754238, GSM2754240, GSM2754244, GSM2754246, GSM2754248, GSM2464909, GSM2464915, GSM2464917, GSM2464919 |
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| Cell/Tissue List |
HeLa, HepG2, A549, MM6, Huh7, Jurkat, CD4T, peripheral-blood, GSC-11, iSLK, MSC, TIME, TREX, endometrial |
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| Seq Type List | m6A-seq,MeRIP-seq | |||||||||||||||||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000446327.6,ENST00000313117.11,ENST00000409276.5,ENST00000443213.5,ENST00000431066.5,ENST00000425941.6,ENST00000415527.1,ENST00000425778.5 | |||||||||||||||||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | na | |||||||||||||||||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||||||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||||||||||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1