Details of RNA Modification Site of hg38
mod ID m6A_site_470770 mod Site chr2:44931291-44931292:-
mod Type m6A Sequence CCGGAAAACGCCACAGGAGGACATGTTTCTGCAGATGTAGT
Motif Score 3.64304761904762
RNA Structure Motif ........((((((......)))))).....
 MFE -4.40
Support Dataset Num 3 Support sub-Dataset Num 3
Support Dataset List GSE125803, GSE52600, GSE55572
Support sub-Dataset List

GSM3582054, GSM1272364, GSM1339395
Cell/Tissue List A549, H1B, hESCs
Seq Type List MeRIP-seq,m6A-seq
Transcript ID List ENST00000437916.2,ENST00000430847.2,ENST00000444871.2,ENST00000432125.2
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000437916.2ENSG00000259439.2LINC01833lincRNAintron-1
ENST00000430847.2ENSG00000259439.2LINC01833lincRNAintron-1
ENST00000444871.2ENSG00000259439.2LINC01833lincRNAexon-3
ENST00000432125.2ENSG00000259439.2LINC01833lincRNAintron-1
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 31597913, 25456834, 24981863

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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